From eb77317d03f2fd8c17c47d20ae56e6ffdd96814e Mon Sep 17 00:00:00 2001 From: Benjamin J Perry Date: Wed, 26 Jul 2023 12:03:11 +1200 Subject: [PATCH] adding --interactive to multiqc call in ag_gbs_qc_prism.sh adding --interactive to multiqc call in ag_gbs_qc_prism.sh to force rendering of interactive report. --- ag_gbs_qc_prism.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ag_gbs_qc_prism.sh b/ag_gbs_qc_prism.sh index 7a3f8a1..05859da 100755 --- a/ag_gbs_qc_prism.sh +++ b/ag_gbs_qc_prism.sh @@ -929,7 +929,7 @@ function html() { # fastqc and multiqc mkdir -p $OUT_ROOT/html/multiqc rm -rf $OUT_ROOT/html/multiqc/* - tardis -d $OUT_ROOT --hpctype local --shell-include-file $OUT_ROOT/multiqc_env.inc multiqc -i \"multifastqc for $RUN\" -o $OUT_ROOT/html/multiqc $OUT_ROOT/../../illumina/$PLATFORM/$RUN/*/fastqc_run/fastqc + tardis -d $OUT_ROOT --hpctype local --shell-include-file $OUT_ROOT/multiqc_env.inc multiqc --interactive -i \"multifastqc for $RUN\" -o $OUT_ROOT/html/multiqc $OUT_ROOT/../../illumina/$PLATFORM/$RUN/*/fastqc_run/fastqc cp -pR $OUT_ROOT/../../illumina/$PLATFORM/$RUN/*/fastqc_run/fastqc $OUT_ROOT/html/fastqc