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Add option to avoid user-defined restriction sites #6

I added user-configurable rules for handling restriction sites (like BsaI) with both mutation and regeneration strategies, allowing researchers to specify forbidden sequences that should be avoided in the output.

@dansuissa dansuissa assigned dansuissa and unassigned dansuissa Feb 25, 2025
@dansuissa dansuissa requested a review from Adibvafa March 30, 2025 13:22
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Adibvafa commented Jul 1, 2025

@dansuissa Can you write and run tests, also add explanation to README

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2 participants