diff --git a/environments/Conect/files/galaxy/config/job_conf.yml b/environments/Conect/files/galaxy/config/job_conf.yml index 9b1ae53..96e9842 100644 --- a/environments/Conect/files/galaxy/config/job_conf.yml +++ b/environments/Conect/files/galaxy/config/job_conf.yml @@ -70,7 +70,7 @@ limits: - type: environment_total_concurrent_jobs id: cluster_1 - value: 40 + value: 30 - type: environment_total_concurrent_jobs id: cluster_2 value: 30 @@ -109,8 +109,14 @@ limits: value: 2 tools: - - class: local # these special tools that aren't parameterized for remote execution - expression tools, upload, etc - environment: "cluster_1" +# - class: local # these special tools that aren't parameterized for remote execution - expression tools, upload, etc +# environment: "cluster_1" + + - id: "Add_a_column1" + destination: "cluster_1" + + - id: "addValue" + destination: "cluster_1" - id: "arriba" destination: "cluster_8" @@ -154,6 +160,9 @@ tools: - id: "featurecounts" destination: "cluster_8" + - id: "Filter1" + destination: "cluster_1" + - id: "freebayes" destination: "cluster_16" @@ -199,6 +208,9 @@ tools: - id: "picard_ReplaceSamHeader" destination: "java_cluster" + - id: "regexColumn1" + destination: "cluster_1" + - id: "repenrich" destination: "cluster_16" @@ -230,7 +242,7 @@ tools: destination: "cluster_8" - id: "snpEff" - destination: "java_cluster" + destination: "cluster_2" - id: "snpSift_annotate" destination: "java_cluster" @@ -238,12 +250,18 @@ tools: - id: "snpsift" destination: "java_cluster" + - id: "snpSift_extractFields" + destination: "cluster_2" + - id: "spades" destination: "cluster_16" - id: "star_fusion" destination: "cluster_8" + - id: "tp_sort_header_tool" + destination: "cluster_1" + - id: "trimmomatic" destination: "cluster_4" @@ -257,7 +275,10 @@ tools: destination: "varscan" - id: "vcf2maf" - destination: "cluster_4" + destination: "cluster_1" - id: "vcfvcfintersect" destination: "vcfvcfintersect" + + - id: "vcf2hrdetect" + destination: "cluster_1"