cleaning

Author: natir

sequence/bamreader.cpp

@@ -51,40 +51,5 @@ bool BamReader::next()
         sam_close(fp_in);
     }
 
-
-
-    // LOOP SNIPPET
-    //    while(sam_read1(fp_in,bamHdr,aln) > 0){
-
-    //        int32_t pos = aln->core.pos +1; //left most position of alignment in zero based coordianate (+1)
-    //        char *chr = bamHdr->target_name[aln->core.tid] ; //contig name (chromosome)
-    //        uint32_t len = aln->core.l_qseq; //length of the read.
-
-    //        uint8_t *q = bam_get_seq(aln); //quality string
-    //        uint32_t q2 = aln->core.qual ; //mapping quality
-
-    //        qDebug()<<chr;
-
-
-    //        char *qseq = (char *)malloc(len);
-
-    //        for(int i=0; i< len ; i++){
-    //            qseq[i] = seq_nt16_str[bam_seqi(q,i)]; //gets nucleotide id and converts them into IUPAC id.
-    //        }
-
-
-
-    //        qDebug()<<chr<<pos<<len<<qseq<<q<<q2;
-
-    //        //        if(strcmp(chrom, chr) == 0){
-
-    //        //            if(locus > pos+len){
-    //        //                printf("%s\t%d\t%d\t%s\t%s\t%d\n",chr,pos,len,qseq,q,q2);
-    //        //            }
-    //        //        }
-    //    }
-
-
-
     return false;
 }