close labsquare#79

Author: natir

cli/cliparser.cpp

@@ -38,6 +38,8 @@ void populateCLIParser(QCommandLineParser &parser)
     QCommandLineOption threadOption(QStringList() << "t" << "threads",
                                     QCoreApplication::tr("Specifies the number of files which can be processed simultaneously. Use by default all avaible CPU"),
                                     "threads");
+    QCommandLineOption citeOption("cite",
+                                       QCoreApplication::tr("Get in bibtex format to cite FastQt"));
 
 //    QCommandLineOption outImgFormatOption(QStringList() << "out-img-format",
 //                                          QCoreApplication::tr("Specifies the format image output. By default value is \"svg\". Possible value is \"svg\" and \"png\"."),
@@ -47,5 +49,6 @@ void populateCLIParser(QCommandLineParser &parser)
 
     parser.addOption(outputOption);
     parser.addOption(threadOption);
+    parser.addOption(citeOption);
 //    parser.addOption(outImgFormatOption);
 }

cli/maincli.cpp

@@ -10,11 +10,27 @@ MainCLI::MainCLI(QCommandLineParser* parser, QObject *parent) : QEventLoop(paren
 
 int MainCLI::exec()
 {
+    // check cite option if is set return citation in bibtex format and stop
+    if (mParser->isSet("cite"))
+    {
+        cout<<"@misc{FastQt,"<<endl;
+        cout<<"      author = {Labsquare Team et al},"<<endl;
+        cout<<"      title = {FastQt: a quality control tool for high throughput sequence data.},"<<endl;
+        cout<<"      year = {2017},"<<endl;
+        cout<<"      publisher = {GitHub},"<<endl;
+        cout<<"      journal = {GitHub repository},"<<endl;
+        cout<<"      howpublished = {\\url{https://github.com/labsquare/fastQt},"<<endl;
+        cout<<"      doi = {doi:10.5281/zenodo.824549}"<<endl;
+        cout<<"}"<<endl;
+        exit();
+        return 0;
+    }
 
     if (mParser->positionalArguments().isEmpty())
     {
         qDebug()<<"No fastq provided";
-        quit();
+        exit();
+        return 0;
     }
 
 //    QString tmp = mParser->value("out-img-format");

main.cpp

@@ -58,7 +58,7 @@ int main(int argc, char *argv[])
 
     parser.process(a);
 
-    if(parser.positionalArguments().empty())
+    if(parser.positionalArguments().empty() && !parser.isSet("cite"))
     {
         MainWindow window;
         window.show();