diff --git a/sate/filemgr.py b/sate/filemgr.py
index 62f43c9..cc2b413 100644
--- a/sate/filemgr.py
+++ b/sate/filemgr.py
@@ -89,6 +89,7 @@ class TempFS(object):
         "trace",
         "log",
         "results",
+        "query.fasta"
         ]
 
     def __init__(self):