updated and added plugin tests

Author: kmader

src/test/java/fourquant/FakePlugin.java

@@ -0,0 +1,24 @@
+package fourquant;
+
+import ij.ImagePlus;
+import ij.plugin.filter.PlugInFilter;
+import ij.process.ImageProcessor;
+
+import java.io.Serializable;
+
+/**
+ * A fake imagej plugin for testing purposes
+ * Created by mader on 5/9/16.
+ */
+public class FakePlugin implements PlugInFilter, Serializable {
+
+    @Override
+    public int setup(String s, ImagePlus imagePlus) {
+        return 0;
+    }
+
+    @Override
+    public void run(ImageProcessor imageProcessor) {
+        System.out.println("FakePlugin has run!");
+    }
+}

src/test/java/fourquant/FakePluginTests.java

@@ -0,0 +1,39 @@
+package fourquant;
+
+import fourquant.imagej.ImageJSettings;
+import fourquant.pacs.api.PatientTable;
+import fourquant.pacs.patients;
+import fourquant.riqae.USBImageJSettings;
+import org.junit.FixMethodOrder;
+import org.junit.Test;
+import org.junit.runners.MethodSorters;
+
+import java.io.Serializable;
+
+import static org.junit.Assert.assertEquals;
+
+/**
+ * Created by mader on 5/9/16.
+ */
+@FixMethodOrder(MethodSorters.NAME_ASCENDING)
+public class FakePluginTests implements Serializable {
+    final static String fijiPath = "/Applications/Fiji.app/Contents/";
+    final static ImageJSettings ijs = new USBImageJSettings(fijiPath,false,false,false);
+
+    // get the default values from the communication singleton class
+    final static String bindPort = patients.PacsCommunicationSingleton.port();
+    final static String bindAddress = patients.PacsCommunicationSingleton.server();
+    final static String bindName = patients.PacsCommunicationSingleton.bind();
+    final static String userName = patients.PacsCommunicationSingleton.userName();
+    static {
+        // register the fake plugin
+    }
+    PatientTable pt = PatientTable.create_from_csv(FakePluginTests.class.getResource("/single_name.csv").getPath(),
+            ijs,bindPort,bindAddress,userName,bindName);
+
+    @Test
+    public void createFakeTableTest() {
+        assertEquals("Should only be one element",pt.count(),1);
+    }
+
+}

src/test/java/fourquant/PatientTableTests.java

@@ -1,13 +1,41 @@
 package fourquant;
 
+import fourquant.imagej.ImageJSettings;
+import fourquant.pacs.api.PatientTable;
+import fourquant.pacs.patients;
+import fourquant.riqae.USBImageJSettings;
+import org.junit.FixMethodOrder;
+import org.junit.Test;
+import org.junit.runners.MethodSorters;
+
+import java.io.Serializable;
+
+import static org.junit.Assert.assertEquals;
+
 /**
+ * Tests to verify the PatientTable works correctly
  * Created by mader on 5/6/16.
  */
 @FixMethodOrder(MethodSorters.NAME_ASCENDING)
-public class PatientTableTests extends Serializable {
+public class PatientTableTests implements Serializable {
     final static String fijiPath = "/Applications/Fiji.app/Contents/";
     final static ImageJSettings ijs = new USBImageJSettings(fijiPath,false,false,false);
-    final static int bindPort = 11112;
-    final static String bindAddress = "localhost";
+
+    // get the default values from the communication singleton class
+    final static String bindPort = patients.PacsCommunicationSingleton.port();
+    final static String bindAddress = patients.PacsCommunicationSingleton.server();
+    final static String bindName = patients.PacsCommunicationSingleton.bind();
+    final static String userName = patients.PacsCommunicationSingleton.userName();
+    static {
+        // register the fake plugin
+    }
+    PatientTable pt = PatientTable.create_from_csv(FakePluginTests.class.getResource("/single_name.csv").getPath(),
+            ijs,bindPort,bindAddress,userName,bindName);
+
+    @Test
+    public void testCountOfTable() {
+        assertEquals("Should only be one element",pt.count(),1);
+
+    }
 
 }

src/test/scala/fourquant/SSQLTests.scala

@@ -1,14 +1,16 @@
 package fourquant
 
+import fourquant.pacs.patients.PacsCommunicationSingleton
 import fourquant.riqae.USBImageJSettings
 import org.scalatest.{FunSuite, Matchers}
 
 class SSQLTests extends FunSuite with Matchers with Serializable {
     val use_hive = true
   val fijiPath = "/Applications/Fiji.app/Contents/"
   val ijs = new USBImageJSettings(fijiPath, false, false, false)
-  val bindPort = 11112
-  val bindAddress = "localhost"
+  val bindPort = PacsCommunicationSingleton.port;
+  val bindAddress = PacsCommunicationSingleton.server;
+
 
   val sq = fourquant.db.demo.createSQLContext(None,bindPort,
     bindAddress,"", true, ijs,use_hive)