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Commits on Jan 9, 2026

• Merge pull request #122 from 3dem/allow-2.7

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  jamaliki

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Commits on Jan 8, 2026

• If statement for torch backend

  jamaliki

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Commits on Jan 7, 2026

• Bump version from 1.0.14 to 1.0.15

  jamaliki

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• Merge pull request #121 from 3dem/model-bundle-move

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  jamaliki

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• Move to new torch

  jamaliki

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• Bump version

  jamaliki

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• Change where model definitions go

  jamaliki

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Commits on May 8, 2025

• Fix typo

  jamaliki

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• Fix to numpy < 2 in ModelAngelo v1.0.13

  jamaliki

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Commits on Feb 18, 2025

• Merge pull request #116 from 3dem/refine-fix

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  jamaliki

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• Fixing refine WIP

  jamaliki

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• Pin pytorch version in install_script.sh

  jamaliki

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Commits on Oct 30, 2024

• Merge pull request #102 from the-lay/main

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  jamaliki

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Commits on Oct 24, 2024

• Bump numpy

  jamaliki

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• Merge pull request #113 from 3dem/revert-hmm-cleaning

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  jamaliki

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• Bump version

  jamaliki

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• Deprecation warnings

  jamaliki

  committed
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• Deprecation warnings

  jamaliki

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• Remove temperature modification, causing chain breaks

  jamaliki

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Commits on Oct 23, 2024

• Deprecation warnings

  jamaliki

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• Deprecation warnings

  jamaliki

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• Deprecation warnings

  jamaliki

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• Deprecation warnings

  jamaliki

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• Revert pyhmmer update

  jamaliki

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Commits on Sep 29, 2024

• Merge branch '3dem:main' into main

  the-lay

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Commits on Jul 9, 2024

• Pin ESM version

  jamaliki

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Commits on Feb 26, 2024

• Update README.md

  jamaliki

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Commits on Feb 22, 2024

• Write cleaned fasta files to output folder instead of input folder

  the-lay

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Commits on Feb 8, 2024

• Update README.md

  jamaliki

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Commits on Dec 7, 2023

• Merge pull request #93 from jowodo/main

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  jamaliki

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• Update install_script.sh

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  jowodo

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• Update install_script.sh

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  jowodo

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Commits on Dec 6, 2023

• Fix bug in write_fasta_only_aa if all X

  jamaliki

  committed
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Commits on Nov 29, 2023

• Merge pull request #92 from 3dem/jamaliki-patch-1

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  jamaliki

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Commits on Nov 28, 2023

• Fix bugs in build_no_seq with entropy score

  jamaliki

  committed
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