3DGenomes
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- TADbit Public
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models f…
3DGenomes/TADbit’s past year of commit activity - IMP_BioSystem_Domain_Fly_Genome Public
Example of using IMP to model a region of the Fly genome https://integrativemodeling.org/systems/
3DGenomes/IMP_BioSystem_Domain_Fly_Genome’s past year of commit activity - Sox9_METALoci Public
Code example of METALoci applied to H3K27ac for the Sox9 mouse locus during development (E13.5)
3DGenomes/Sox9_METALoci’s past year of commit activity - OligoFISSEQ Public
Example of the analysis workflow of one image produced by OligoFISSEQ. All the files needed are contained in this repository
3DGenomes/OligoFISSEQ’s past year of commit activity - 3DAROC Public
list of notebooks for 4 days course on Hi-C data handling and 3D modeling of chromatin
3DGenomes/3DAROC’s past year of commit activity - TADdyn Public
TADdyn is a Python library that allows to model and explore single or time-series 3C-based data.
3DGenomes/TADdyn’s past year of commit activity
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